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1

The structure of the TOM core complex in the mitochondrial outer membrane

Bausewein, Thomas, Naveed, Hammad, Liang, Jie, Nussberger, Stephan

Journal:

Biological Chemistry

Year:

2020

File:

PDF, 793 KB

2020

2

[IEEE 2013 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC) - Osaka (2013.7.3-2013.7.7)] 2013 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC) - Modeling spatial population dynamics of stem cell lineage in wound healing and cancerogenesis

Youfang Cao,, Naveed, Hammad, Liang, Claire, Jie Liang,

Year:

2013

Language:

english

File:

PDF, 748 KB

english, 2013

3

[IEEE 2011 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society - Boston, MA (2011.08.30-2011.09.3)] 2011 Annual International Conference of the IEEE Engineering in Medicine and Biology Society - Mechanical forces mediate localized topological change in epithelia

Li, Yingzi, Naveed, Hammad, Kachalo, Sema, Xu, Lisa X., Liang, Jie

Year:

2011

Language:

english

File:

PDF, 362 KB

english, 2011

4

GeTFEP: A general transfer free energy profile of transmembrane proteins

Tian, Wei, Naveed, Hammad, Lin, Meishan, Liang, Jie

Journal:

Protein Science

Year:

2019

Language:

english

File:

PDF, 4.28 MB

english, 2019

5

[IEEE 2020 42nd Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC) in conjunction with the 43rd Annual Conference of the Canadian Medical and Biological Engineering Society - Montreal, QC, Canada (2020.7.20-2020.7.24)] 2020 42nd Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC) - Predicting the pathogenicity of protein coding mutations using Natural Language Processing

Rehmat, Naeem, Farooq, Hammad, Kumar, Sanjay, ul Hussain, Sibt, Naveed, Hammad

Year:

2020

File:

PDF, 152 KB

2020

6

Lipid-binding surfaces of membrane proteins: Evidence from evolutionary and structural analysis

Larisa Adamian, Hammad Naveed, Jie Liang

Journal:

Biochimica et Biophysica Acta (BBA) - Biomembranes

Year:

2011

Language:

english

File:

PDF, 1.46 MB

english, 2011

7

Computational studies of membrane proteins: Models and predictions for biological understanding

Jie Liang, Hammad Naveed, David Jimenez-Morales, Larisa Adamian, Meishan Lin

Journal:

Biochimica et Biophysica Acta (BBA) - Biomembranes

Year:

2012

Language:

english

File:

PDF, 1.28 MB

english, 2012

8

Improving the Resistance of a Eukaryotic β-Barrel Protein to Thermal and Chemical Perturbations

Dennis Gessmann, Frauke Mager, Hammad Naveed, Thomas Arnold, Sara Weirich, Dirk Linke, Jie Liang, Stephan Nussberger

Journal:

Journal of Molecular Biology

Year:

2011

Language:

english

File:

PDF, 1.09 MB

english, 2011

9

Engineered Oligomerization State of OmpF Protein through Computational Design Decouples Oligomer Dissociation from Unfolding

Hammad Naveed, David Jimenez-Morales, Jun Tian, Volga Pasupuleti, Linda J. Kenney, Jie Liang

Journal:

Journal of Molecular Biology

Year:

2012

Language:

english

File:

PDF, 966 KB

english, 2012

10

Topological Properties and Variations of Cells in Proliferating Epithelia: Impact of Mechanical Force and Division Orientation

Li, Yingzi, Naveed, Hammad, Kachalo, Sema, Liang, Jie

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 35 KB

english, 2011

11

Engineering Biological Nanopores with Enhanced Properties

Naveed, Hammad, Liang, Jie

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 54 KB

english, 2012

12

Computational Free Energy Scale of Amino Acid Residues in Membrane Protein from Statistical Mechanics

Lin, Meishan, Naveed, Hammad, Liang, Jie

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 41 KB

english, 2012

13

[American Institute of Aeronautics and Astronautics 49th AIAA Aerospace Sciences Meeting including the New Horizons Forum and Aerospace Exposition - Orlando, Florida ()] 49th AIAA Aerospace Sciences Meeting including the New Horizons Forum and Aerospace Exposition - A Detailed Aerodynamic Design and Analysis of a 2-D Vertical Axis Wind Turbine Using Sliding Mesh in CFD

Durrani, Naveed, Hameed, Haris, Rahman, Hammad, Chaudhry, Sajid

Year:

2011

Language:

english

File:

PDF, 5.23 MB

english, 2011

14

Structure-based protein-protein interaction networks and drug design

Naveed, Hammad, Han, Jingdong J.

Journal:

Quantitative Biology

Year:

2013

Language:

english

File:

PDF, 201 KB

english, 2013

15

TMBB-Explorer: A Webserver to Predict the Structure, Oligomerization State, Ppi Interface, and Thermodynamic Properties of the Transmembrane Domains of Outer Membrane Proteins

Naveed, Hammad, Liang, Jie

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 118 KB

english, 2012

16

Statistical Mechanical Model for the Transfer Free Energy of Amino Acids in the Context of Membrane Protein OmpLA

Lin, Meishan, Naveed, Hammad, Liang, Jie

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 42 KB

english, 2013

17

Predicting Strained Regions for Folding and Protein-Protein Interaction in Bacterial Outer Membranes

Naveed, Hammad, Jackups, Ronald, Liang, Jie

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 39 KB

english, 2009

18

Accurate Ab Initio Prediction of Three Dimensional Structures of Beta-Barrel Membrane Proteins from Sequences

Naveed, Hammad, Jackups, Ronald, Liang, Jie

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 37 KB

english, 2010

19

On Mechanisms of Regulation of Tissue Elongation in Drosophila Wing

Li, Yingzi, Naveed, Hammad, Kachalo, Sema, Xu, Lisa X., Liang, Jie

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 33 KB

english, 2012

20

Intertwined Coil Inspired Modeling of β-Barrel Membrane Protein Structures using Predicted Interstrand Interaction Constraints

Naveed, Hammad, Xu, Yun, Jackups, Ronald, Liang, Jie

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 37 KB

english, 2011

21

Predicting Three-Dimensional Structures of Transmembrane Domains of β-Barrel Membrane Proteins

Naveed, Hammad, Xu, Yun, Jackups, Ronald, Liang, Jie

Journal:

Journal of the American Chemical Society

Year:

2012

Language:

english

File:

PDF, 2.30 MB

english, 2012

22

[IEEE 2014 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC) - Chicago, IL (2014.8.26-2014.8.30)] 2014 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society - Effects of mechanical properties on tumor invasion: Insights from a cellular model

Yingzi Li,, Naveed, Hammad, Jie Liang,, Xu, Lisa X.

Year:

2014

Language:

english

File:

PDF, 846 KB

english, 2014

23

[IEEE 2013 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC) - Osaka (2013.7.3-2013.7.7)] 2013 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC) - Dynamic mechanical finite element model of biological cells for studying cellular pattern formation

Jieling Zhao,, Naveed, Hammad, Kachalo, Sema, Youfang Cao,, Wei Tian,, Jie Liang,

Year:

2013

Language:

english

File:

PDF, 1.82 MB

english, 2013

24

ICI Cancellation in OFDM Systems by Frequency Offset Reduction

Ur Rehman, Naveed, Zhang, Lei, Hammad, Muhammad Zahid, Mwangosi, Emmanuel Anania

Journal:

Applied Mechanics and Materials

Year:

2014

Language:

english

File:

PDF, 231 KB

english, 2014

25

Diclofenac suppository as a preemptive analgesia in ultrasound guided biopsy of prostate: Randomized controlled trial

Haroon, Naveed, Ather, M Hammad, khan, Salma, Kumar, Pirkash, Salam, Basit

Journal:

Year:

2015

Language:

english

File:

PDF, 252 KB

english, 2015

26

An integrated structure- and system-based framework to identify new targets of metabolites and known drugs

Naveed, Hammad, Hameed, Umar S., Harrus, Deborah, Bourguet, William, Arold, Stefan T., Gao, Xin

Journal:

Year:

2015

Language:

english

File:

PDF, 435 KB

english, 2015

27

Finding optimal interaction interface alignments between biological complexes

Cui, Xuefeng, Naveed, Hammad, Gao, Xin

Journal:

Year:

2015

Language:

english

File:

PDF, 971 KB

english, 2015

28

Outer membrane protein folding and topology from a computational transfer free energy scale

Lin, Meishan, Gessmann, Dennis, Naveed, Hammad, Liang, Jie

Journal:

Journal of the American Chemical Society

Year:

2016

Language:

english

File:

PDF, 2.49 MB

english, 2016

29

[ACM Press the 6th ACM Conference - Atlanta, Georgia (2015.09.09-2015.09.12)] Proceedings of the 6th ACM Conference on Bioinformatics, Computational Biology and Health Informatics - BCB '15 - Pairwise structure alignment specifically tuned for surface pockets and interaction interfaces

Cui, Xuefeng, Naveed, Hammad, Gao, Xin

Year:

2015

Language:

english

File:

PDF, 161 KB

english, 2015

30

Improved 3D Structure Prediction of Beta-Barrel Membrane Proteins by using Evolutionary Coupling Constraints, Reduced State Space and an Empirical Potential Function

Tian, Wei, Liang, Jie, Naveed, Hammad

Journal:

Biophysical Journal

Year:

2016

Language:

english

File:

PDF, 39 KB

english, 2016

31

ModuleAlign: module-based global alignment of protein–protein interaction networks

Hashemifar, Somaye, Ma, Jianzhu, Naveed, Hammad, Canzar, Stefan, Xu, Jinbo

Journal:

Year:

2016

Language:

english

File:

PDF, 561 KB

english, 2016

32

Lymphopenia in treatment-naive relapsing multiple sclerosis: Table.

Lim, Zhi Wei, Elwood, Elliot, Naveed, Hammad, Galea, Ian

Journal:

Neurology: Neuroimmunology & Neuroinflammation

Year:

2016

Language:

english

File:

PDF, 246 KB

english, 2016

33

The effect of systemic inflammation on human brain barrier function

Elwood, Elliot, Lim, Zhi, Naveed, Hammad, Galea, Ian

Journal:

Brain, Behavior, and Immunity

Year:

2016

Language:

english

File:

PDF, 695 KB

english, 2016

34

A Structure Based Framework to Identify Novel Targets of FDA Approved Kinase Inhibitors

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 41 KB

english, 2017

35

Improving 3D Structure Prediction of Beta-Barrel Membrane Proteins

Tian, Wei, Naveed, Hammad, Liang, Jie

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 40 KB

english, 2017

36

Efficient computation of transfer free energies of amino acids in beta-barrel membrane proteins

Tian, Wei, Lin, Meishan, Naveed, Hammad, Liang, Jie

Journal:

Year:

2017

Language:

english

File:

PDF, 856 KB

english, 2017

37

High-resolution structure prediction of β -barrel membrane proteins

Tian, Wei, Lin, Meishan, Tang, Ke, Liang, Jie, Naveed, Hammad

Journal:

Proceedings of the National Academy of Sciences

Year:

2018

Language:

english

File:

PDF, 1.15 MB

english, 2018

38

Understanding the Toxicity and Repurposing Potential of Kinase Inhibitors

Journal:

Biophysical Journal

Year:

2018

Language:

english

File:

PDF, 46 KB

english, 2018

39

[IEEE 2018 15th International Bhurban Conference on Applied Sciences and Technology (IBCAST) - Islamabad, Pakistan (2018.1.9-2018.1.13)] 2018 15th International Bhurban Conference on Applied Sciences and Technology (IBCAST) - Passive design technique for tamper-resistant embedded system

Anjum, Naveed, Hammad, Saifullah, Faheem, Muhammad

Year:

2018

Language:

english

File:

PDF, 603 KB

english, 2018

40

Mechanisms of Regulating Tissue Elongation in Drosophila Wing: Impact of Oriented Cell Divisions, Oriented Mechanical Forces, and Reduced Cell Size

Li, Yingzi, Naveed, Hammad, Kachalo, Sema, Xu, Lisa X., Liang, Jie, Aegerter, Christof Markus

Journal:

Year:

2014

Language:

english

File:

PDF, 2.48 MB

english, 2014

41

Mechanical Model of Geometric Cell and Topological Algorithm for Cell Dynamics from Single-Cell to Formation of Monolayered Tissues with Pattern

Kachalo, Sëma, Naveed, Hammad, Cao, Youfang, Zhao, Jieling, Liang, Jie, Merks, Roeland M.H.

Journal:

Year:

2015

Language:

english

File:

PDF, 33.74 MB

english, 2015

42

Incidence and risk factors of Pulmonary Complications after Cardiopulmonary bypass

Naveed, Anjum, Azam, Hammad, Ghulam Murtaza, Humayoun, Altaf Ahmad, Rana, Ahmad Raza Baig, Mirza

Journal:

Pakistan Journal of Medical Sciences

Year:

2017

Language:

english

File:

PDF, 344 KB

english, 2017

43

Multi-scale contrast and relative motion-based key frame extraction

Ejaz, Naveed, Baik, Sung Wook, Majeed, Hammad, Chang, Hangbae, Mehmood, Irfan

Journal:

EURASIP Journal on Image and Video Processing

Year:

2018

Language:

english

File:

PDF, 3.77 MB

english, 2018

44

Understanding Citizen Issues through Reviews: A Step towards Data Informed Planning in Smart Cities

Dilawar, Noman, Majeed, Hammad, Beg, Mirza Omer, Ejaz, Naveed, Muhammad, Khan, Mehmood, Irfan, Nam, Yunyoung

Journal:

Applied Sciences

Year:

2018

Language:

english

File:

PDF, 1.91 MB

english, 2018

45

Controlling the material removal and roughness of Inconel 718 in laser machining

Ahmed, Naveed, Rafaqat, Madiha, Pervaiz, Salman, Umer, Usama, Alkhalefa, Hesham, Shar, Muhammad Ali, Mian, Syed Hammad

Journal:

Materials and Manufacturing Processes

Year:

2019

Language:

english

File:

PDF, 2.67 MB

english, 2019

46

Structural and morphological properties of annealed MoO 3 films on different substrates

Raza, Syed Hammad, Afzal, Naveed, Rafique, Mohsin, Imran, M., Ahmad, R.

Journal:

Surface Review and Letters

Year:

2019

Language:

english

File:

PDF, 1.64 MB

english, 2019

47

Reconstruction of Complex Zygomatic Bone Defects Using Mirroring Coupled with EBM Fabrication of Titanium Implant

Moiduddin, Khaja, Hammad Mian, Syed, Umer, Usama, Ahmed, Naveed, Alkhalefah, Hisham, Ameen, Wadea

Journal:

Year:

2019

Language:

english

File:

PDF, 16.26 MB

english, 2019

48

Satellite-based (2000–2015) drought hazard assessment with indices, mapping, and monitoring of Potohar plateau, Punjab, Pakistan

Khan, Ramla, Gilani, Hammad, Iqbal, Naveed, Shahid, Imran

Journal:

Environmental Earth Sciences

Year:

2020

File:

PDF, 10.25 MB

2020

49

Balantidium coli in domestic animals: An emerging protozoan pathogen of zoonotic significance

Ahmed, Arslan, Ijaz, Muhammad, Ayyub, Rana Muhammad, Ghaffar, Awais, Ghauri, Hammad Nayyar, Aziz, Muhammad Umair, Ali, Sadaqat, Altaf, Muhammad, Awais, Muhammad, Naveed, Muhammad, Nawab, Yasir, Javed,

Journal:

Year:

2019

File:

PDF, 977 KB

2019

50

Reconstruction of Complex Zygomatic Bone Defects Using Mirroring Coupled with EBM Fabrication of Titanium Implant

Moiduddin, Khaja, Hammad Mian, Syed, Umer, Usama, Ahmed, Naveed, Alkhalefah, Hisham, Ameen, Wadea

Journal:

Year:

2019

File:

PDF, 16.26 MB

2019